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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.177060.1 | ||||||||
Common Name | Csa_3G727990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 281aa MW: 31573.8 Da PI: 5.3836 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.2 | 1.9e-24 | 122 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ ++++pr+YYrCt++ +C+++k+v+r +++p + +tY g+H+++ Cucsa.177060.1 122 VDDGHAWRKYGQKTILNAKYPRNYYRCTHKydqTCQATKQVQRLQDNPPKFRTTYYGNHTCS 183 59***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-24 | 108 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.599 | 117 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-24 | 118 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-36 | 122 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 123 | 182 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDCSWPDTTP FDRRKAADEL LRGRELAQQL RAYLQISSTP ASQDLLTRIL SSFSKTLSIL 60 NHRCDSDDIN GSIVDSPEDH GSRKSEESGD SCKSSTPNND RRGCYKRRKS CQSWARESCD 120 LVDDGHAWRK YGQKTILNAK YPRNYYRCTH KYDQTCQATK QVQRLQDNPP KFRTTYYGNH 180 TCSNFLKASD IVLGSSNFDD SCSGVLLSFD TTAAPNFFLP HDPTLVKKEE VVTPDAGSGR 240 DDEAVCSPSD YMSTADDHLS EVFMGSVVDF EDDDLPPFHF * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00408 | DAP | Transfer from AT3G56400 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984021 | 0.0 | GU984021.1 Cucumis sativus WRKY protein (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267577.1 | 0.0 | probable WRKY transcription factor 70-like | ||||
TrEMBL | A0A0A0LF31 | 0.0 | A0A0A0LF31_CUCSA; WRKY transcription factor | ||||
TrEMBL | E7CEX0 | 0.0 | E7CEX0_CUCSA; WRKY protein | ||||
STRING | POPTR_0006s10950.1 | 9e-69 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 3e-42 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.177060.1 |
Publications ? help Back to Top | |||
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