PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.177060.1

Common Name

Csa_3G727990

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 281aa MW: 31573.8 Da PI: 5.3836

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.177060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.2	1.9e-24	122	183	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYGqK++ ++++pr+YYrCt++ +C+++k+v+r +++p + +tY g+H+++ Cucsa.177060.1 122 VDDGHAWRKYGQKTILNAKYPRNYYRCTHKydqTCQATKQVQRLQDNPPKFRTTYYGNHTCS 183 59*************************99999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-24	108	183	IPR003657	WRKY domain
PROSITE profile	PS50811	20.599	117	180	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-24	118	183	IPR003657	WRKY domain
SMART	SM00774	3.1E-36	122	184	IPR003657	WRKY domain
Pfam	PF03106	2.1E-24	123	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864	Biological Process	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	Biological Process	response to chitin
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDCSWPDTTP FDRRKAADEL LRGRELAQQL RAYLQISSTP ASQDLLTRIL SSFSKTLSIL 60 NHRCDSDDIN GSIVDSPEDH GSRKSEESGD SCKSSTPNND RRGCYKRRKS CQSWARESCD 120 LVDDGHAWRK YGQKTILNAK YPRNYYRCTH KYDQTCQATK QVQRLQDNPP KFRTTYYGNH 180 TCSNFLKASD IVLGSSNFDD SCSGVLLSFD TTAAPNFFLP HDPTLVKKEE VVTPDAGSGR 240 DDEAVCSPSD YMSTADDHLS EVFMGSVVDF EDDDLPPFHF *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00408	DAP	Transfer from AT3G56400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984021	0.0	GU984021.1 Cucumis sativus WRKY protein (WRKY22) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001267577.1	0.0	probable WRKY transcription factor 70-like
TrEMBL	A0A0A0LF31	0.0	A0A0A0LF31_CUCSA; WRKY transcription factor
TrEMBL	E7CEX0	0.0	E7CEX0_CUCSA; WRKY protein
STRING	POPTR_0006s10950.1	9e-69	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	3e-42	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Cucsa.177060.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]